Supplements for the manuscript submitted to Bioinformatics

Simultaneous Inference of Biological Networks of Multiple Species from Genome-wide Data and Evolutionary Information: A Semi-supervised Approach
by Hisashi Kashima, Yoshihiro Yamanishi, Tsuyoshi Kato, Masashi Sugiyama and Koji Tsuda

Supplementary Material

• Supplementary documents for the detailed algorithm and resutls

Source code of Link Propagation

• Source code
• README

Gold standard metabolic network

• C. elegans
• H. pylori
• S. cerevisiae

Gene expression data

• C. elegans
• H. pylori
• S. cerevisiae

Cross-species sequence similarity

• C. elegans-H. pylori
• C. elegans-S. cerevisiae
• H. pylori-S. cerevisiae